Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015953089.1_cds_XP_016492396.1_82613
CDS Infomation

[gene=LOC107811919] [db_xref=GeneID:107811919] [protein=probable polygalacturonase] [protein_id=XP_016492396.1] [location=complement(join(20020..20693,21198..21268,21372..21546,21624..21744,22164..22481,23606..23635))] [gbkey=CDS]
Sequence

ATGACACAGAATATTATCATGAAGAGGCTAGCAGTTCTACTTTTGCTATTGGCATTCAGT
CACTGTATATTACATACCAAAGCTCAGTTTGATGGAGAATGCAAGTTCAATAAGCCTTTG
AAACCCAGACCTCACAGTGTCTCAGTATTGGACTTTGGGGCTGTGGGGGATGGGAAAACT
ATAAATACCGTAGCCTTTCAAAATGCTATTTTCTATCTCAAGTCCTTCGCCGACAAGGGC
GGCGCACAGCTCTATGTTCCCGCTGGCAAGTGGCTGACTAGAAGCATCAATCTTACTAGC
CACCTTACACTGTTCCTGGAAAAGGATGCCGTTATTCTAGGATCTGAGGATTATGCTCAT
TGGGATGTAGTTGAAGCCTTACCATCTTATGGCCGAGGTATTGAGGCACAATATGGAAGA
TACCGCAGCTTGATTACTGGAAATAATTTAACTGATGTTGTAATAACAGGTAACAACGGG
ACTATTGATGGCCAGGGCTCTATATGGTGGGATATGTTCAATTCCCATTCCTTAAATTAT
ACCCGACCACATCTAGTAGAGTTTGTTAGCTCAAAAGATGTTGTTATTTCAAACTTGACC
CTTTTGAATGCTCCTGGTTGGAACATCCGCCCAGCATATTGCAGTAACGTGGTCATTCAG
AACTTAACGGTTCATTCTCCACAAGACTCCCCATACACTAATGGGATCGTCCCAGATTCT
TCTGAGCATGTCTGCATTGAAAACAGCAACATCACCATTGGTTATGATGCTGTCGTTCTC
AAAAGCGGTTGGGATGAGTATGGTATTTCATATGGGAAACCTACGTCAAATGTCCACATT
CGAGGGGTGAGATTACAGTCCTCTGCAGGTTCTGCTGTGGCTTTTGGTAGTGAGATGTCT
GGTGGTATCTCCAATGTGCTTGTTGAGCACATTTCCCTACACGACTCCCTTTTCGGGATT
GACCTGAAGACAGCAAGAGGAAGGGGTGGTTACATCAAAGATATTCTCATTATGAACGTG
GTTATGGAAAATGTGCAAGTGGGAATCAAGGCCACTGGTTACTATGATTCGCATCCAGAT
GAGAAATATGATCCCTCTTCATTACCTGTAGTTAGTGGGATCACCTTTAAGGACATTGTT
GGTACGAATATTTCGATAGCAGGCAATTTCACCGGGTTATCTGAATCTCCCTTCACCTCA
ATATGTCTATCAAATATCTCTTTCTCCATTTCTTCCGACCCTTCTACACCATGGTTATGC
TCTGATGTATCGGGATCTTCTGAAAATGTGTTTCCTGAACCATGTCCTGAGCTTCAGAGC
TCGTTTTCCAGTTCTAGTTCTGCTTGCTTTGCTCTTCCAAACCCATACACTGAAGTTGCA
GTATTATAA

Peptide Sequence

PEP ID

XP_016492396.1
PEP Infomation

PREDICTED: probable polygalacturonase [Nicotiana tabacum]
Sequence

MTQNIIMKRLAVLLLLLAFSHCILHTKAQFDGECKFNKPLKPRPHSVSVLDFGAVGDGKT
INTVAFQNAIFYLKSFADKGGAQLYVPAGKWLTRSINLTSHLTLFLEKDAVILGSEDYAH
WDVVEALPSYGRGIEAQYGRYRSLITGNNLTDVVITGNNGTIDGQGSIWWDMFNSHSLNY
TRPHLVEFVSSKDVVISNLTLLNAPGWNIRPAYCSNVVIQNLTVHSPQDSPYTNGIVPDS
SEHVCIENSNITIGYDAVVLKSGWDEYGISYGKPTSNVHIRGVRLQSSAGSAVAFGSEMS
GGISNVLVEHISLHDSLFGIDLKTARGRGGYIKDILIMNVVMENVQVGIKATGYYDSHPD
EKYDPSSLPVVSGITFKDIVGTNISIAGNFTGLSESPFTSICLSNISFSISSDPSTPWLC
SDVSGSSENVFPEPCPELQSSFSSSSSACFALPNPYTEVAVL

Transcript Sequence

Gene sequence data has not been registered.